This could be an older issue, but it happens with beta 1 and beta 3 on linux.
I'm creating a project "MacMiniM1-VMM.vpj" (type 'Other') in a new "/mnt/scratch/vbox/slickedit/test1/" directory. However, the source tree I add to the project is in a very different place: "/mnt/macmini-m1/scratch/vbox/svn/trunk/src/VBox/VMM/". When project + workspace is created and opened, it's empty. Looking into the "Project Properties" it lists "/macmini-m1/scratch/vbox/svn/trunk/src/VBox/VMM/*" in the project files list. The "/mnt" part of the path is gone.
If I try correct the issue by the "Remove All" and "Add Tree" buttons, I navigate to the directory and add it again. Same thing, no leading "/mnt/". Doesn't matter what I add under /mnt/, as long as it isn't in "/mnt/scratch". However, if I for instance try add "/mnt/scratch/src/bash/bash-2.0/" (using the "Add Tree" button), it works and shows up as "../../../src/bash/bash-2.0/*.*".
My guess is that this is an issue with the relative path calculation, where it somehow doesn't add the "../../../.." prefix.
- bird
P.S. the "Properties..." button in the "Project Properties" dialog hangs / locks slickedit here on my linux box and I have to do a "killall -9 vs_exe" to get rid of it.